Detalhe da pesquisa
1.
Critical Assessment of Metagenome Interpretation: the second round of challenges.
Nat Methods;
19(4): 429-440, 2022 04.
Artigo
em Inglês
| MEDLINE
| ID: mdl-35396482
2.
ARGprofiler-a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets.
Bioinformatics;
40(3)2024 Mar 04.
Artigo
em Inglês
| MEDLINE
| ID: mdl-38377397
3.
Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining.
Bioinformatics;
39(1)2023 01 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-36453849
4.
Automated download and clean-up of family-specific databases for kmer-based virus identification.
Bioinformatics;
37(5): 705-710, 2021 05 05.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33031509
5.
LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences.
J Antimicrob Chemother;
74(6): 1473-1476, 2019 06 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-30863844
6.
Rapid and precise alignment of raw reads against redundant databases with KMA.
BMC Bioinformatics;
19(1): 307, 2018 Aug 29.
Artigo
em Inglês
| MEDLINE
| ID: mdl-30157759
7.
Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data.
J Antimicrob Chemother;
71(9): 2484-8, 2016 09.
Artigo
em Inglês
| MEDLINE
| ID: mdl-27365186
8.
The European livestock resistome.
mSystems;
9(4): e0132823, 2024 Apr 16.
Artigo
em Inglês
| MEDLINE
| ID: mdl-38501800
9.
Nanopore sequencing technology for clinical diagnosis of infectious diseases where laboratory capacity is meager: A case report.
Heliyon;
9(7): e17439, 2023 Jul.
Artigo
em Inglês
| MEDLINE
| ID: mdl-37539288
10.
SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies.
Microbiol Spectr;
10(6): e0264122, 2022 12 21.
Artigo
em Inglês
| MEDLINE
| ID: mdl-36377945
11.
PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest.
mSystems;
7(2): e0118021, 2022 04 26.
Artigo
em Inglês
| MEDLINE
| ID: mdl-35382558
12.
Metagenomic DNA sequencing for semi-quantitative pathogen detection from urine: a prospective, laboratory-based, proof-of-concept study.
Lancet Microbe;
3(8): e588-e597, 2022 08.
Artigo
em Inglês
| MEDLINE
| ID: mdl-35688170
13.
MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads.
Biol Methods Protoc;
6(1): bpab008, 2021.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33981853
14.
CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data.
Genome Biol;
21(1): 103, 2020 04 28.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32345331
15.
Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering.
Sci Rep;
10(1): 3033, 2020 02 20.
Artigo
em Inglês
| MEDLINE
| ID: mdl-32080241
16.
Improved Resistance Prediction in Mycobacterium tuberculosis by Better Handling of Insertions and Deletions, Premature Stop Codons, and Filtering of Non-informative Sites.
Front Microbiol;
10: 2464, 2019.
Artigo
em Inglês
| MEDLINE
| ID: mdl-31736907